Abstract

Summary"/jats:title""jats:p"We designed a PyQt graphical user interface – Sequanix – aiming at democratizing the use of Snakemake pipelines. Although the primary goal of Sequanix was to facilitate the execution of NGS Snakemake pipelines available in the Sequana project ("jats:ext-link xmlns:xlink="http://www.w3.org/1999/xlink" ext-link-type="uri" xlink:href="http://sequana.readthedocs.io""http://sequana.readthedocs.io"/jats:ext-link"), it can also handle any Snakemake pipelines. Therefore, Sequanix should be useful to all Snakemake developers willing to expose their pipelines to a wider audience."/jats:p""/jats:sec""jats:sec""jats:title"Availability"/jats:title""jats:p"Source code available on "jats:ext-link xmlns:xlink="http://www.w3.org/1999/xlink" ext-link-type="uri" xlink:href="http://github.com/sequana/sequana""http://github.com/sequana/sequana"/jats:ext-link" and standalone on "jats:ext-link xmlns:xlink="http://www.w3.org/1999/xlink" ext-link-type="uri" xlink:href="http://bioconda.github.io""http://bioconda.github.io"/jats:ext-link" (sequana package)."/jats:p""/jats:sec Document type: Article