Scipediacontent: Scipediacontent moved page Draft Content 467572479 to Noll et al 2017a

2021-02-02T00:59:11Z

Scipediacontent moved page Draft Content 467572479 to Noll et al 2017a

Scipediacontent: Created page with " == Abstract == Root system analysis is a complex task, often performed using fully automated image analysis pipelines. However, these pipelines are usually evaluated with a..."

2021-02-02T00:59:06Z

Created page with " == Abstract == Root system analysis is a complex task, often performed using fully automated image analysis pipelines. However, these pipelines are usually evaluated with a..."

New page

== Abstract ==

Root system analysis is a complex task, often performed using fully automated image analysis pipelines. However, these pipelines are usually evaluated with a limited number of ground-truth root images, most likely of limited size and complexity. We have used a root model, ArchiSimple to create a large and diverse library of ground-truth root system images (10.000). This library was used to evaluate the accuracy and usefulness of several image descriptors classicaly used in root image analysis pipelines. Our analysis highlighted that the accuracy of the different metrics is strongly linked to the type of root system analyzed (e.g. dicot or monocot) as well as their size and complexity. Metrics that have been shown to be accurate for small dicot root systems might fail for large dicots root systems or small monocot root systems. Our study also demonstrated that the usefulness of the different metrics when trying to discriminate genotypes or experimental conditions may vary. Overall, our analysis is a call to caution when automatically analyzing root images. If a thorough calibration is not performed on the dataset of interest, unexpected errors might arise, especially for large and complex root images. To facilitate such calibration, both the image library and the different codes used in the study have been made available to the community.

Document type: Preprint

== Full document ==
<pdf>Media:Draft_Content_467572479-beopen3525-9281-document.pdf</pdf>

== Original document ==

The different versions of the original document can be found in:

* [http://dx.doi.org/10.1101/074922 http://dx.doi.org/10.1101/074922] under the license https://creativecommons.org/licenses/by

* [http://dx.doi.org/10.3389/fpls.2017.00447 http://dx.doi.org/10.3389/fpls.2017.00447]

* [http://europepmc.org/articles/PMC5376626 http://europepmc.org/articles/PMC5376626]

* [http://hdl.handle.net/2078.1/184181 http://hdl.handle.net/2078.1/184181]

* [http://prodinra.inra.fr/record/392590 http://prodinra.inra.fr/record/392590]

* [https://orbi.uliege.be/handle/2268/208918 https://orbi.uliege.be/handle/2268/208918] under the license https://creativecommons.org/licenses/by-sa/3.0/

* [https://www.biorxiv.org/content/biorxiv/early/2016/12/22/074922.full.pdf https://www.biorxiv.org/content/biorxiv/early/2016/12/22/074922.full.pdf]

* [https://www.frontiersin.org/articles/10.3389/fpls.2017.00447/pdf https://www.frontiersin.org/articles/10.3389/fpls.2017.00447/pdf] under the license cc-by

* [http://journal.frontiersin.org/article/10.3389/fpls.2017.00447/full http://journal.frontiersin.org/article/10.3389/fpls.2017.00447/full],
: [http://dx.doi.org/10.3389/fpls.2017.00447 http://dx.doi.org/10.3389/fpls.2017.00447] under the license cc-by

* [https://hal.archives-ouvertes.fr/hal-01517235 https://hal.archives-ouvertes.fr/hal-01517235],
: [https://hal.archives-ouvertes.fr/hal-01517235/document https://hal.archives-ouvertes.fr/hal-01517235/document],
: [https://hal.archives-ouvertes.fr/hal-01517235/file/using_%7B38E01ACB-422C-4EB7-A016-08B1862A2647%7D.pdf https://hal.archives-ouvertes.fr/hal-01517235/file/using_%7B38E01ACB-422C-4EB7-A016-08B1862A2647%7D.pdf]

* [https://juser.fz-juelich.de/record/828812 https://juser.fz-juelich.de/record/828812],
: [https://juser.fz-juelich.de/search?p=id:%22FZJ-2017-02668%22 https://juser.fz-juelich.de/search?p=id:%22FZJ-2017-02668%22] under the license http://creativecommons.org/licenses/by-sa/

* [https://syndication.highwire.org/content/doi/10.1101/074922 https://syndication.highwire.org/content/doi/10.1101/074922],
: [http://dx.doi.org/10.1101/074922 http://dx.doi.org/10.1101/074922]

* [https://www.biorxiv.org/content/biorxiv/early/2016/09/14/074922.full.pdf https://www.biorxiv.org/content/biorxiv/early/2016/09/14/074922.full.pdf],
: [https://www.biorxiv.org/content/10.1101/074922v2 https://www.biorxiv.org/content/10.1101/074922v2],
: [http://www.biorxiv.org/content/biorxiv/early/2016/09/14/074922.full.pdf http://www.biorxiv.org/content/biorxiv/early/2016/09/14/074922.full.pdf],
: [http://www.biorxiv.org/content/early/2016/12/22/074922 http://www.biorxiv.org/content/early/2016/12/22/074922],
: [https://orbi.uliege.be/handle/2268/202341 https://orbi.uliege.be/handle/2268/202341],
: [https://academic.microsoft.com/#/detail/2521110837 https://academic.microsoft.com/#/detail/2521110837]

* [https://www.frontiersin.org/articles/10.3389/fpls.2017.00447/full https://www.frontiersin.org/articles/10.3389/fpls.2017.00447/full],
: [https://www.ncbi.nlm.nih.gov/pubmed/28421089 https://www.ncbi.nlm.nih.gov/pubmed/28421089],
: [https://dial.uclouvain.be/pr/boreal/object/boreal:184181 https://dial.uclouvain.be/pr/boreal/object/boreal:184181],
: [https://www.cabdirect.org/cabdirect/abstract/20173275538 https://www.cabdirect.org/cabdirect/abstract/20173275538],
: [http://journal.frontiersin.org/article/10.3389/fpls.2017.00447/full http://journal.frontiersin.org/article/10.3389/fpls.2017.00447/full],
: [https://doi.org/10.3389/fpls.2017.00447 https://doi.org/10.3389/fpls.2017.00447],
: [https://orbi.uliege.be/handle/2268/208918 https://orbi.uliege.be/handle/2268/208918],
: [https://www.frontiersin.org/articles/10.3389/fpls.2017.00447/pdf https://www.frontiersin.org/articles/10.3389/fpls.2017.00447/pdf],
: [https://pubmed.ncbi.nlm.nih.gov/28421089 https://pubmed.ncbi.nlm.nih.gov/28421089],
: [http://juser.fz-juelich.de/record/828812 http://juser.fz-juelich.de/record/828812],
: [https://hal.archives-ouvertes.fr/hal-01517235/document https://hal.archives-ouvertes.fr/hal-01517235/document],
: [https://academic.microsoft.com/#/detail/2603692492 https://academic.microsoft.com/#/detail/2603692492]

* [ ]

DOIS: 10.3389/fpls.2017.00447 10.1101/074922

← Older revision	Revision as of 00:59, 2 February 2021
(No difference)

Noll et al 2017a - Revision history

Scipediacontent: Scipediacontent moved page Draft Content 467572479 to Noll et al 2017a

Scipediacontent: Created page with " == Abstract == Root system analysis is a complex task, often performed using fully automated image analysis pipelines. However, these pipelines are usually evaluated with a..."